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Root iTRAQ protein profile analysis of two Citrus species differing in aluminum-tolerance in response to long-term aluminum-toxicity

Identifieur interne : 000459 ( Main/Exploration ); précédent : 000458; suivant : 000460

Root iTRAQ protein profile analysis of two Citrus species differing in aluminum-tolerance in response to long-term aluminum-toxicity

Auteurs : Huan-Xin Jiang [République populaire de Chine] ; Lin-Tong Yang [République populaire de Chine] ; Yi-Ping Qi [République populaire de Chine] ; Yi-Bin Lu [République populaire de Chine] ; Zeng-Rong Huang [République populaire de Chine] ; Li-Song Chen [République populaire de Chine]

Source :

RBID : PMC:4647617

English descriptors

Abstract

Background

Limited information is available on aluminum (Al)-toxicity-responsive proteins in woody plant roots. Seedlings of ‘Xuegan’ (Citrus sinensis) and ‘Sour pummelo’ (Citrus grandis) were treated for 18 weeks with nutrient solution containing 0 (control) or 1.2 mM AlCl3 · 6H2O (+Al). Thereafter, we investigated Citrus root protein profiles using isobaric tags for relative and absolute quantification (iTRAQ). The aims of this work were to determine the molecular mechanisms of plants to deal with Al-toxicity and to identify differentially expressed proteins involved in Al-tolerance.

Results

C. sinensis was more tolerant to Al-toxicity than C. grandis. We isolated 347 differentially expressed proteins from + Al Citrus roots. Among these proteins, 202 (96) proteins only presented in C. sinensis (C. grandis), and 49 proteins were shared by the two species. Of the 49 overlapping proteins, 45 proteins were regulated in the same direction upon Al exposure in the both species. These proteins were classified into following categories: sulfur metabolism, stress and defense response, carbohydrate and energy metabolism, nucleic acid metabolism, protein metabolism, cell transport, biological regulation and signal transduction, cell wall and cytoskeleton metabolism, and jasmonic acid (JA) biosynthesis. The higher Al-tolerance of C. sinensis may be related to several factors, including: (a) activation of sulfur metabolism; (b) greatly improving the total ability of antioxidation and detoxification; (c) up-regulation of carbohydrate and energy metabolism; (d) enhancing cell transport; (e) decreased (increased) abundances of proteins involved in protein synthesis (proteiolysis); (f) keeping a better balance between protein phosphorylation and dephosphorylation; and (g) increasing JA biosynthesis.

Conclusions

Our results demonstrated that metabolic flexibility was more remarkable in C. sinenis than in C. grandis roots, thus improving the Al-tolerance of C. sinensis. This provided the most integrated view of the adaptive responses occurring in Al-toxicity roots.

Electronic supplementary material

The online version of this article (doi:10.1186/s12864-015-2133-9) contains supplementary material, which is available to authorized users.


Url:
DOI: 10.1186/s12864-015-2133-9
PubMed: 26573913
PubMed Central: 4647617


Affiliations:

Links toward previous steps (curation, corpus...)

Le document en format XML

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<term>Aluminum (metabolism)</term>
<term>Aluminum (toxicity)</term>
<term>Citrus sinensis (drug effects)</term>
<term>Citrus sinensis (genetics)</term>
<term>Citrus sinensis (growth & development)</term>
<term>Citrus sinensis (metabolism)</term>
<term>Dose-Response Relationship, Drug</term>
<term>Plant Proteins (genetics)</term>
<term>Plant Proteins (metabolism)</term>
<term>Plant Roots (drug effects)</term>
<term>Plant Roots (metabolism)</term>
<term>Plant Roots (physiology)</term>
<term>Proteomics</term>
<term>Seedlings (drug effects)</term>
<term>Seedlings (growth & development)</term>
<term>Species Specificity</term>
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<term>Time Factors</term>
<term>Transcriptome (drug effects)</term>
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<term>Plant Proteins</term>
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<keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en">
<term>Aluminum</term>
<term>Plant Proteins</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="toxicity" xml:lang="en">
<term>Aluminum</term>
</keywords>
<keywords scheme="MESH" qualifier="drug effects" xml:lang="en">
<term>Citrus sinensis</term>
<term>Plant Roots</term>
<term>Seedlings</term>
<term>Transcriptome</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en">
<term>Citrus sinensis</term>
</keywords>
<keywords scheme="MESH" qualifier="growth & development" xml:lang="en">
<term>Citrus sinensis</term>
<term>Seedlings</term>
</keywords>
<keywords scheme="MESH" qualifier="metabolism" xml:lang="en">
<term>Citrus sinensis</term>
<term>Plant Roots</term>
</keywords>
<keywords scheme="MESH" qualifier="physiology" xml:lang="en">
<term>Plant Roots</term>
</keywords>
<keywords scheme="MESH" xml:lang="en">
<term>Dose-Response Relationship, Drug</term>
<term>Proteomics</term>
<term>Species Specificity</term>
<term>Tandem Mass Spectrometry</term>
<term>Time Factors</term>
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<div type="abstract" xml:lang="en">
<sec>
<title>Background</title>
<p>Limited information is available on aluminum (Al)-toxicity-responsive proteins in woody plant roots. Seedlings of ‘Xuegan’ (
<italic>Citrus sinensis</italic>
) and ‘Sour pummelo’ (
<italic>Citrus grandis</italic>
) were treated for 18 weeks with nutrient solution containing 0 (control) or 1.2 mM AlCl
<sub>3</sub>
 · 6H
<sub>2</sub>
O (+Al). Thereafter, we investigated
<italic>Citrus</italic>
root protein profiles using isobaric tags for relative and absolute quantification (iTRAQ). The aims of this work were to determine the molecular mechanisms of plants to deal with Al-toxicity and to identify differentially expressed proteins involved in Al-tolerance.</p>
</sec>
<sec>
<title>Results</title>
<p>
<italic>C. sinensis</italic>
was more tolerant to Al-toxicity than
<italic>C. grandis</italic>
. We isolated 347 differentially expressed proteins from + Al
<italic>Citrus</italic>
roots. Among these proteins, 202 (96) proteins only presented in
<italic>C. sinensis</italic>
(
<italic>C. grandis</italic>
), and 49 proteins were shared by the two species. Of the 49 overlapping proteins, 45 proteins were regulated in the same direction upon Al exposure in the both species. These proteins were classified into following categories: sulfur metabolism, stress and defense response, carbohydrate and energy metabolism, nucleic acid metabolism, protein metabolism, cell transport, biological regulation and signal transduction, cell wall and cytoskeleton metabolism, and jasmonic acid (JA) biosynthesis. The higher Al-tolerance of
<italic>C. sinensis</italic>
may be related to several factors, including: (
<italic>a</italic>
) activation of sulfur metabolism; (
<italic>b</italic>
) greatly improving the total ability of antioxidation and detoxification; (
<italic>c</italic>
) up-regulation of carbohydrate and energy metabolism; (
<italic>d</italic>
) enhancing cell transport; (
<italic>e</italic>
) decreased (increased) abundances of proteins involved in protein synthesis (proteiolysis); (
<italic>f</italic>
) keeping a better balance between protein phosphorylation and dephosphorylation; and (
<italic>g</italic>
) increasing JA biosynthesis.</p>
</sec>
<sec>
<title>Conclusions</title>
<p>Our results demonstrated that metabolic flexibility was more remarkable in
<italic>C. sinenis</italic>
than in
<italic>C. grandis</italic>
roots, thus improving the Al-tolerance of
<italic>C. sinensis</italic>
. This provided the most integrated view of the adaptive responses occurring in Al-toxicity roots.</p>
</sec>
<sec>
<title>Electronic supplementary material</title>
<p>The online version of this article (doi:10.1186/s12864-015-2133-9) contains supplementary material, which is available to authorized users.</p>
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</TEI>
<affiliations>
<list>
<country>
<li>République populaire de Chine</li>
</country>
<region>
<li>Fujian</li>
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<settlement>
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<region name="Fujian">
<name sortKey="Jiang, Huan Xin" sort="Jiang, Huan Xin" uniqKey="Jiang H" first="Huan-Xin" last="Jiang">Huan-Xin Jiang</name>
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<name sortKey="Chen, Li Song" sort="Chen, Li Song" uniqKey="Chen L" first="Li-Song" last="Chen">Li-Song Chen</name>
<name sortKey="Chen, Li Song" sort="Chen, Li Song" uniqKey="Chen L" first="Li-Song" last="Chen">Li-Song Chen</name>
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<name sortKey="Jiang, Huan Xin" sort="Jiang, Huan Xin" uniqKey="Jiang H" first="Huan-Xin" last="Jiang">Huan-Xin Jiang</name>
<name sortKey="Lu, Yi Bin" sort="Lu, Yi Bin" uniqKey="Lu Y" first="Yi-Bin" last="Lu">Yi-Bin Lu</name>
<name sortKey="Lu, Yi Bin" sort="Lu, Yi Bin" uniqKey="Lu Y" first="Yi-Bin" last="Lu">Yi-Bin Lu</name>
<name sortKey="Qi, Yi Ping" sort="Qi, Yi Ping" uniqKey="Qi Y" first="Yi-Ping" last="Qi">Yi-Ping Qi</name>
<name sortKey="Yang, Lin Tong" sort="Yang, Lin Tong" uniqKey="Yang L" first="Lin-Tong" last="Yang">Lin-Tong Yang</name>
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</tree>
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